Chapter 5. Managing JE Files

Table of Contents

Backup Procedures
About Unix Copy Utilities
Offline Backups
Hot Backup
Incremental Backups
Recovery Procedures
Normal Recovery
Catastrophic Recovery
Designing Your Application for Recovery
Recovery for Multi-Threaded Applications
Recovery in Multi-Process Applications
Using Hot Failovers
Removing Log Files
Configuring the Logging Subsystem
Setting the Log File Size
Configuring the Logging Region Size
Configuring In-Memory Logging
Setting the In-Memory Log Buffer Size

JE is capable of storing several types of files on disk:

Of these, you must manage your data and log files by ensuring that they are backed up. You should also pay attention to the amount of disk space your log files are consuming, and periodically remove any unneeded files. Finally, you can optionally tune your logging subsystem to best suit your application's needs and requirements. These topics are discussed in this chapter.


Before we can discuss JE file management, we need to describe checkpoints. When databases are modified (that is, a transaction is committed), the modifications are recorded in JE's logs, but they are not necessarily reflected in the actual database files on disk.

This means that as time goes on, increasingly more data is contained in your log files that is not contained in your data files. As a result, you must keep more log files around than you might actually need. Also, any recovery run from your log files will take increasingly longer amounts of time, because there is more data in the log files that must be reflected back into the data files during the recovery process.

You can reduce these problems by periodically running a checkpoint against your environment. The checkpoint:

  • Flushes dirty pages from the in-memory cache. This means that data modifications found in your in-memory cache are written to the database files on disk. Note that a checkpoint also causes data dirtied by an uncommitted transaction to also be written to your database files on disk. In this latter case, JE's normal recovery is used to remove any such modifications that were subsequently abandoned by your application using a transaction abort.

    Normal recovery is describe in Recovery Procedures.

  • Writes a checkpoint record.

  • Flushes the log. This causes all log data that has not yet been written to disk to be written.

  • Writes a list of open databases.

There are several ways to run a checkpoint. One way is to use the db_checkpoint command line utility. (Note, however, that this command line utility cannot be used if your environment was opened using DB_PRIVATE.)

You can also run a thread that periodically checkpoints your environment for you by calling the DB_ENV->txn_checkpoint() method.

Note that you can prevent a checkpoint from occurring unless more than a specified amount of log data has been written since the last checkpoint. You can also prevent the checkpoint from running unless more than a specified amount of time has occurred since the last checkpoint. These conditions are particularly interesting if you have multiple threads or processes running checkpoints.

For configuration information, see the DB_ENV->txn_checkpoint() API reference page.

Note that running checkpoints can be quite expensive. JE must flush every dirty page to the backing database files. On the other hand, if you do not run checkpoints often enough, your recovery time can be unnecessarily long and you may be using more disk space than you really need. Also, you cannot remove log files until a checkpoint is run. Therefore, deciding how frequently to run a checkpoint is one of the most common tuning activity for JE applications.

For example, to run a checkpoint from a separate thread of control:

#include <stdio.h>
#include <pthread.h>
#include <stdlib.h>
#include "db.h"     

void *checkpoint_thread(void *);

    int ret;
    u_int32_t env_flags;
    DB_ENV *envp;
    const char *db_home_dir = "/tmp/myEnvironment";
    pthread_t ptid;

    envp = NULL;

    /* Open the environment */
    ret = db_env_create(&envp, 0);
    if (ret != 0) {
        fprintf(stderr, "Error creating environment handle: %s\n",
        return (EXIT_FAILURE);
    env_flags = DB_CREATE     |  /* If the environment does not
                                  * exist, create it. */
                DB_INIT_LOCK  |  /* Initialize locking */
                DB_INIT_LOG   |  /* Initialize logging */
                DB_INIT_MPOOL |  /* Initialize the cache */
                DB_THREAD     |  /* Free-thread the env handle. */
                DB_INIT_TXN;     /* Initialize transactions */

    /* Open the environment. */
    ret = envp->open(envp, db_home_dir, env_flags, 0);
    if (ret != 0) {
        fprintf(stderr, "Error opening environment: %s\n",
        goto err;

    /* Start a checkpoint thread. */ 
    if ((ret = pthread_create( 
        &ptid, NULL, checkpoint_thread, (void *)envp)) != 0) { 
                "txnapp: failed spawning checkpoint thread: %s\n", 
            goto err;

     * All other threads and application shutdown code 
     * omitted for brevity. 


void * 
checkpoint_thread(void *arg) { 
    DB_ENV *dbenv; 
    int ret;

    dbenv = arg;

    /* Checkpoint once a minute. */ 
    for (;; sleep(60)) 
        if ((ret = dbenv->txn_checkpoint(dbenv, 0, 0, 0)) != 0) { 
            dbenv->err(dbenv, ret, "checkpoint thread"); 
            exit (1); 

    /* NOTREACHED */